Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------AVSNCGQVVS--YLAPCITYATGRAPGPNGG-----------------CCSGVRSLNAAASTTADRQATCSCLKQQT---SGMGGIKPDLVAGIPSKCGVNIPYAIKPSTDCTKVR |
1W2Q Chain:A ((1-127)) | GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24494 for 598 contacts (-41.0/contact) +
2D Compatibility (PS) -9457 + (NN) 71 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -36180.0 ( -60.50 by residue)
QMean score : 0.225
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