Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGTVTVSLAPCLNYLKKGGPVPPACCNGIKSLNAAAK--------TTADRQ-AACNCLKTASTSIAGINLSYASSLPGKCGVNVPYKISPSTDCSKVQ-----
4HLB Chain:A ((21-115))
--DSDRFTAFEEELLARYADKG---------IRSVDVAAYAKGIDIVFVAADRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVLDYKKDAATDTRTRFVLKLR
General information:
TITO was launched using:
RESULT:
Template:
4HLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11896 for 445 contacts (-26.7/contact) +
2D Compatibility (PS) -8146 + (NN) -863 + (LL) 124
1D Compatibility (HY) -400 + (ID) 950
Total energy: -22131.0 ( -49.73 by residue)
QMean score : 0.077
(partial model without unconserved sides chains):
PDB file :
Tito_4HLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HLB-query.scw
PDB file :
Tito_Scwrl_4HLB.pdb
: