Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------ITCGQV--SSSLAPCVNFLKSGGAPSP----------------------QCCNGLGGMVNQAKSTADKQAACNCLKTAAKNMPGLNP----------ANAESLPSKCKVNIPYKISFSTNCNSIK
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSC--GVRCMRQTRTN-----
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16067 for 558 contacts (-28.8/contact) +
2D Compatibility (PS) -7603 + (NN) -2489 + (LL) 1080
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -28729.0 ( -51.49 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: