Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AP---YTEALSCG-----QVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGV-NAGNAASFPGKCGVSIPYKISPSTDCSKVQ
2FOK Chain:A ((287-386))
VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLK------IEQIQDNLKKLGFDEV----IETIENDIKGLINTGIFIEIKGR-FYQLKDHILQFVIPNRLV
General information:
TITO was launched using:
RESULT:
Template:
2FOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25845 for 541 contacts (-47.8/contact) +
2D Compatibility (PS) -8936 + (NN) -3585 + (LL) 56
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -44360.0 ( -82.00 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_2FOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FOK-query.scw
PDB file :
Tito_Scwrl_2FOK.pdb
: