Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------AISCGQV--SSALRPCISYA---------------------SGNGGILPPACCSGVKRLAG-----AAQSTADKQAVCKCIKSAAAGLNAGKAAGIPSKCGVSVPYSISTSVDCSKIH
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20085 for 571 contacts (-35.2/contact) +
2D Compatibility (PS) -8570 + (NN) -2092 + (LL) 456
1D Compatibility (HY) -800 + (ID) 1000
Total energy: -32091.0 ( -56.20 by residue)
QMean score : 0.198
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: