Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------LNCGQVDSKMKPCLTYVQ-------------GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI-----HNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM--------CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19606 for 510 contacts (-38.4/contact) +
2D Compatibility (PS) -7148 + (NN) 382 + (LL) 688
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -30234.0 ( -59.28 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: