Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------AITCGQV--SSAIAPCLSYARGTGP---------------------APSASCCSGVRNLKSAASTAADRRAACNCLKNAARGVSGLN----------AGNAASIPSKCGVSIPYTISTSTDCSR
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-----
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27365 for 594 contacts (-46.1/contact) +
2D Compatibility (PS) -7716 + (NN) -535 + (LL) 740
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -38226.0 ( -64.35 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: