Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSPLQLSPCAGAITGSGPPSATCCSRLRE-----------QTPCLCGYYRDPNLRQYVNSPNAQKVARTCGVSVRC
1BWO Chain:A ((7-77))
----DSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNARSIPPKCGVNL--
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9859 for 367 contacts (-26.9/contact) +
2D Compatibility (PS) -6076 + (NN) -39 + (LL) 548
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -19826.0 ( -54.02 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: