Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCQVTQLAPCASAISSSSPPSSQCCAKIKE-----------QKPCLCQYMKNPSLKAYVSSPNAKKVANACGVPIPKC
1BWO Chain:A ((7-78))
----DSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNARSIPPKCGVNLP--
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6030 for 369 contacts (-16.3/contact) +
2D Compatibility (PS) -6208 + (NN) -2288 + (LL) 684
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -18342.0 ( -49.71 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: