Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQTCAGQLRGLAPCLRYSVPPLPGQVPPAPGPECCSALGAVSR----------DCACGTFS----------IINSLPAKCALPPVSCQ
1BWO Chain:A ((2-76))
--DCGHVDSLVRPCLSYVQGG------PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN-----
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28231 for 353 contacts (-80.0/contact) +
2D Compatibility (PS) -5527 + (NN) -4966 + (LL) 476
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -42598.0 ( -120.67 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: