Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQDAKAAVSDSCCAQVRSIGQ--------NPSCLCSVMLSDMAKAS-GIKAEIAITIPKRCNIANRPVGYKCGDYTLP
1SIY Chain:A ((2-78))
-------TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSCL--K-AAAGAVRGINPNNAEALPGKCGVNIP------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28239 for 483 contacts (-58.5/contact) +
2D Compatibility (PS) -6934 + (NN) -1089 + (LL) 576
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -39086.0 ( -80.92 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: