Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------VDCTTVTGLLSTCSAFITYGSPDPYPGSP----------CCDAVMNLNLIADSTDNRKSVCGCLMGLITTYNPNS------TAIATLPGFCGVALGFTIDPNTDCNFVPLF
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58095 for 482 contacts (-120.5/contact) +
2D Compatibility (PS) -7852 + (NN) -6590 + (LL) 852
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -77235.0 ( -160.24 by residue)
QMean score : 0.118
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: