Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------DVNQDKTECANQL--VGLASCLPYVGGQS-----------------KTPTIDCCSGLKQVLDKSRKCLCVLIKDRDD-------PSLGLKINATLAATLPSTCHA--------PVNMTECI
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM-ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35420 for 531 contacts (-66.7/contact) +
2D Compatibility (PS) -8539 + (NN) 2546 + (LL) 176
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -45237.0 ( -85.19 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: