Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------ACNAMT----LQPCLAASQGKV------------------APDPACCTAIKNIGLSADGPQCLCTLATGPLA---------KANGVSADAAMAIPKKCGLPVPKGFMCNNKPVPGS--
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME---NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQR--CDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30769 for 500 contacts (-61.5/contact) +
2D Compatibility (PS) -8734 + (NN) -6254 + (LL) 632
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -50225.0 ( -100.45 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: