Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SDACT-----GLPGLLNCAPFLLG-------SVSSPDAKCCKSLKWLSQHAINREDKRELCKCLKIEDLKH-------------KGVILDRAKALPRLCKVQLPVPLIPDNKD---CDKIKAADEE
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVP-EAVLRDCCQQLAHIS----------EWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITA--VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22681 for 554 contacts (-40.9/contact) +
2D Compatibility (PS) -8476 + (NN) -2907 + (LL) 1044
1D Compatibility (HY) -7200 + (ID) 950
Total energy: -41170.0 ( -74.31 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: