Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SDACT-----GLPGLLNCAPFLLG-------SVSSPDAKCCKSLK-------------WLSQHAINRKDKRELCKCLKVEDLKHKGVILDRAKSLP-RLCKVQLPAPLIPDNID-CDKIKAADEE
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVP-EAVLRDCCQQLAHISEWCRCGALYSMLDS--MYKEH--------GAFPRCRREVVKLTAASITA-VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25836 for 500 contacts (-51.7/contact) +
2D Compatibility (PS) -8663 + (NN) -3171 + (LL) 1172
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -42548.0 ( -85.10 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: