Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------QREPAKCGSSDAGSVLMPCFAFLEQQSR---------------------EPSARCCSAVANSTQKEPPRCLCVFLDQLARAMNRTQPL---QLPSLCGDARLTAERC-KGLFVANRFA
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQV----KQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39190 for 686 contacts (-57.1/contact) +
2D Compatibility (PS) -9236 + (NN) -3228 + (LL) 88
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -54366.0 ( -79.25 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: