Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------VECKNNIAD---LLPCQAAAQSETSTPST------------ECCTAVGKFKDDPACLCSTIAAA-----QAAGFTIDAPVAATIPKRCKLDGYPTSCSKSK
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34306 for 486 contacts (-70.6/contact) +
2D Compatibility (PS) -7742 + (NN) -1757 + (LL) -56
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -49811.0 ( -102.49 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: