Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------EPSCPRVIRE--VAPCLSFFQDD--------------------GPAKPSKRCCEGVTEVNGMAKTKKDRVAICECLKQTLNYIDYDP-----------KRIPLLGKQCGLTIDLPPTGQNTNCSQVAY
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDE--------CQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---CMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34863 for 585 contacts (-59.6/contact) +
2D Compatibility (PS) -8252 + (NN) -5780 + (LL) 1484
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -49711.0 ( -84.98 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: