Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------ALSCPQVQLT---VVPCLGYLRNP------------GPSVPAPCCNGLRGLNNQAKTTPERQSVCRCLKTTAQSL-----SGLNVPALATLPKKCGVNLPYKISTAIDCNTVKY
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM--------CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNL-------MSQPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34061 for 511 contacts (-66.7/contact) +
2D Compatibility (PS) -7395 + (NN) 1798 + (LL) 1088
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -41270.0 ( -80.76 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: