Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KKDLPFCNVELLPCVLPFKVRGHGSKLPNGCCEKMKKS-----------TSCMCRFLMAKER-DLNA-AAHRIFWFCKISVPNCPKI
1BWO Chain:A ((9-78))
---------LVRPCL-SYVQGG--PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLP-----
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18706 for 352 contacts (-53.1/contact) +
2D Compatibility (PS) -5837 + (NN) -3582 + (LL) 540
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -30735.0 ( -87.32 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: