Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQLPILQVIIPIIASMLCFFTRKHKVSWFISFTTTIVTLFISSVLLIKTYNGETITYHLGNWAPPYGIE--LRIDVLNSLILTLVNFVALISVLYSFYINEKEISKNKITGLYSLFLLCLSGLLGILVTNDIFNLYVFLEISSLSSYVLVSMGKD-----KKALVAAFEYLISGTIGATFYLLGIGL----LYSTTG--TLNMSDMAERIVPLYNNNIVKLGTLFIFVGLSNKMALFPLSRWLVNSYSEAPSFVSIFFSGTVTKVMIYVFIRIFYTVFHQNFFLLKLPLSNVIIILALCAIVFGSIFAITAKDIRRLFAHSSVSQIGYIILVLSLNSKIALSAAILHIINHSIIKTSLFMVAGCISYKFGTTKIENLSGLKKSMPYIAFAFTLLSLALVGVPLTNGFISKWYIINVIIESHARISLIVFVVGSFLALIYMWKAVEKMYFESDAVSCVEMTSGKTDVPFPMLFCPLFMATLTLVVGVYSNPIRLVVEKLVF |
| 3RKO Chain:M ((69-490)) | -----------------------------------------------------------MPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIE-----KYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPM---SSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNAS----AEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP-VITVISTFGLVFASVYSLAMLHRAYFGKAKSQIAS--QELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -483123 for 3688 contacts (-131.0/contact) +
2D Compatibility (PS) -41616 + (NN) -10679 + (LL) 7568
1D Compatibility (HY) -44400 + (ID) 4800
Total energy: -577050.0 ( -156.47 by residue)
QMean score : 0.336
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