Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANEHLNLFSLENSDYIYADYNATFPVSDSVKESILEVLSKQVLNPSSLHRKGQEARRILQDARDNIRSAIGVPSNKEIVFTSGATEANSLVMKGIA------GFQHVISAVEHPSILNSA-------CNPHIIPVNQGGIVDLLALERILSELKGNRVIVSVMMANNETGVVQPVKEIAEIAHKFETIYHTDAAQSVGKIKVNMEDLGMDLLTLSAHKFGGIAGSGVLIFNKDLVIEPIIVGGGQEKGLRGGTENIVAIAGLSAALQSISNLLSKMDEIKELRDQLEYELLNLASGIKIF-----GKNSKRLPNTSLIYMPGVKSDVQLMNFDLNNIAVSNGSACSSGKVEPSHVLLAMGATREQAECSIRVSIGPQTKPRDIRKIVDCWYNIYEKNILDMRK |
4HVK Chain:A ((3-372)) | -----------------YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN-GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQ---KLRDDTILVSVQHANNEIGTIQPVEEISEVLAG-KAALHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE-----ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG--------QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSP- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170940 for 3122 contacts (-54.8/contact) +
2D Compatibility (PS) -38284 + (NN) -14411 + (LL) 2228
1D Compatibility (HY) -24000 + (ID) 6100
Total energy: -251507.0 ( -80.56 by residue)
QMean score : 0.529
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