Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAACRGYCRKIYLA--IDNVLYAINETMVMWKKELKSLVKGNPTIFNDKLAISTLDDCLYMLDMRMIVQSGPIISPVIMIVTK
3S4Z Chain:A ((646-713))
LGACVLTQGSQIFLQEPLDHLLSCIQHCLAWYKSRVVP--------EEEEELYSELDDMLESITVRMIKNTNVGIKNNICACLI
General information:
TITO was launched using:
RESULT:
Template:
3S4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20596 for 247 contacts (-83.4/contact) +
2D Compatibility (PS) -5986 + (NN) -2112 + (LL) 296
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -34398.0 ( -139.26 by residue)
QMean score : 0.131
(partial model without unconserved sides chains):
PDB file :
Tito_3S4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S4Z-query.scw
PDB file :
Tito_Scwrl_3S4Z.pdb
: