Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKLSYILIVIFISFPILLAASENNEKTQIKDIKCIGNERVGDQTIKFYIKLEPDSYVNDDDIDSIIKSLYKTKLFASVHAYIDNEKKLVIKVQENPLINKVILKGNKQFKSKELLNNVIQSKPLTIFTETKLQSDLVNLVTLYRHNGKIGVKVEYELDKLDGNRVNLIFKVKEGKTSRVKSVRFIGNKNFSENELERAIKVQSNDIFNKLFRAIFKGGNHYSPQYLLTNEELLDRFYSSKGYINNSIQPIAEIDNNNQIELTFLIDEGQQYLFGSNKVNVEAEIQDPDLKEKVLELITKEDNKVFDRVKVSNAVEKINKYLNEIGYIFAKVNPEYTQHGNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNTSEVQKSRRRLIGSDFFETVKINSYAINDNAVNLDL--NVKEKNTTSLYLGGGVSFPGGAFIKTDFKDRNLFGTGKELSFALEKSQYVFSTNVEVVENNFNDSDTSLGVDVFY---ERQDKPNTTFDSCDWGGIAQLLHKIIENLTNSIRYSYKYNHIHMDNKGGKDEDISEIIRSQQGEYQISS------------VGYTLAYNKLDNLYAPREGYLLRLSQDISGLGGNMNFLKSEFLSFYTHPILSKIDDD--IILRFKMAAGYIFSYTDKELNIGQRFFKGGNE-IRGFDLSGIGPR-------AKDKNKS--SLGGKTYFNLTQQVDFPLPKLYDYVG--IKGSLFVDYATLFGLDI-KKEYEG--KYHDSKLVRVSPGFGFSMPSPFGGRFRLDFGFPLAKEPYDIIPSSNIKFSIEVGI |
4C4V Chain:B ((1-463)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADSSDYTNKSYGTDVTLGFPI--NEENSLRAGLGYVHNSLSNM--QPQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVP----IDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAIYFPHQ--DLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLG---PLVFSYAQPFKKYDGDKAEQFQFNIGK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 14686 for 2903 contacts (5.1/contact) +
2D Compatibility (PS) -43813 + (NN) -10847 + (LL) 25620
1D Compatibility (HY) -19600 + (ID) 5700
Total energy: -39654.0 ( -13.66 by residue)
QMean score : 0.279
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