Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIKVQRKKMELGAEVADQFLSEMNQTKIKIQDAKEATETARNVSKSFAQNAKDKNTELHDKVVNFTKKAETASENAEDFAREAFLSKQSTKTLKQETKEL
1LSJ Chain:A ((64-135))
---KVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKN-ELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFF
General information:
TITO was launched using:
RESULT:
Template:
1LSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14771 for 365 contacts (40.5/contact) +
2D Compatibility (PS) -7430 + (NN) -191 + (LL) 436
1D Compatibility (HY) -1200 + (ID) 950
Total energy: 5436.0 ( 14.89 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_1LSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LSJ-query.scw
PDB file :
Tito_Scwrl_1LSJ.pdb
: