Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNRIVIGISGASGSIYGMHILKALKGADCETHLVISRAGKTTIAHE----ITERLEDITSLADFY----------YSEEKIGEKIASGSFKTSGMIVAPCSMKTMSEIASGVTSNLLTRAADVTLKERRKLVLIVRESPLHLGHLQNMLKLTEMGAIIAPPMPAFYTKPKSLEDIISHSISKVLSLFDIKLPDFKEWQGV
4ZAF Chain:A ((6-200))
---RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQ
General information:
TITO was launched using:
RESULT:
Template:
4ZAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139046 for 1455 contacts (-95.6/contact) +
2D Compatibility (PS) -19309 + (NN) -6830 + (LL) 48
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -183787.0 ( -126.31 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_4ZAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZAF-query.scw
PDB file :
Tito_Scwrl_4ZAF.pdb
: