Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFLKENRAKRSLEIDSTVITLAIITLSLALVVYSVIKGVQKVAAKKTDNILSEVESQKVVSPRQKV
1M6N Chain:A ((339-374))
---------AKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP
General information:
TITO was launched using:
RESULT:
Template:
1M6N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9639 for 104 contacts (-92.7/contact) +
2D Compatibility (PS) -3546 + (NN) 3912 + (LL) 1016
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -10907.0 ( -104.88 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_1M6N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6N-query.scw
PDB file :
Tito_Scwrl_1M6N.pdb
: