Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITLHSQKDFEFMRKAGRLAAETLDFIAPYVKVGVTTNKLNDLCHDFIV-KAGAIPAPLNYKGYPKSICTSKNAVVCHGIPDDKPLKDGDILNIDVTVILNGWYGDTSRMFWAGKPSIKAKRLCDATYVALMEAIKQVKPGNKLNEIGLAVEKYIRDFGYSIVRSYCGHGIGKVFHAPPNVVHFYDQGESLVLKEGMFFTIEPMINAGKHETLLSRLDNWTVTTRDLSLSAQFEHTLGVTEDGVEIFTLSPKNWHFPPYN
4FO8 Chain:A ((2-249))
-TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLG-DGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTSA
General information:
TITO was launched using:
RESULT:
Template:
4FO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154605 for 2184 contacts (-70.8/contact) +
2D Compatibility (PS) -27182 + (NN) -15527 + (LL) 384
1D Compatibility (HY) -23200 + (ID) 7050
Total energy: -227180.0 ( -104.02 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_4FO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FO8-query.scw
PDB file :
Tito_Scwrl_4FO8.pdb
: