Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSI-AKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
2B4Z Chain:A ((1-103))
-----------------------------------------------------------------GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQA-PGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKATNE------
General information:
TITO was launched using:
RESULT:
Template:
2B4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24461 for 727 contacts (-33.6/contact) +
2D Compatibility (PS) -10700 + (NN) -2186 + (LL) 6068
1D Compatibility (HY) -6000 + (ID) 2250
Total energy: -39529.0 ( -54.37 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_2B4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B4Z-query.scw
PDB file :
Tito_Scwrl_2B4Z.pdb
: