Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGVDNKYYTLSDCCGKNGFIVMFICNHCPYVQSIISNLISDVDLLKKDYQ---VNTIAIMPNDVNEYPEDSFENMINFAKENKFTFPYLIDSKQEVAKEYGAVCTPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
3U5R Chain:E ((32-206))
-ITLGTRAADFVLPDAGGNL-------FTLAEFKDSPALLVAFISNRCPFVVLIREALAK----FAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPG--NGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAG--
General information:
TITO was launched using:
RESULT:
Template:
3U5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106786 for 1394 contacts (-76.6/contact) +
2D Compatibility (PS) -18740 + (NN) -7607 + (LL) 780
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -147453.0 ( -105.78 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3U5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U5R-query.scw
PDB file :
Tito_Scwrl_3U5R.pdb
: