Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVLITGHYVR-RLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSIQKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAY--SEPLYVVRINTKNNEIVVGP---VNALMQRKILVKELNWL-EQPKK-GMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 2HMA Chain:A ((25-363)) | ---------------------------------TALLLKEQGYDVIGIFMKNW-----DDTD----CTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEHAGLMYYTIGQRGGLGIG-GDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPEEFTLECTAKFRYRQPDSKVTVHVKGE--KTEVIFAEPQRAITPGQAVVFYDGEECLGGGLIDN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2HMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -189002 for 2467 contacts (-76.6/contact) +
2D Compatibility (PS) -34104 + (NN) -5833 + (LL) 2468
1D Compatibility (HY) -22400 + (ID) 6100
Total energy: -254971.0 ( -103.35 by residue)
QMean score : 0.515
|
|
|