Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEKDFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHAPVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWK--IDRPILNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNI---VLAKPKKKFLSTPEVF---SKYGGNFSKPIEWRDD------TEKDLLKLLKETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
| 4EMD Chain:A ((17-283)) | --AVTVRAPGKVNLYLAVGDLRDDGYHELTTVFHAVSLAD--DVTVRDADVLSIDVVGQ--GEGTVPTDERNLAWQAAELFADHVGRAPDVSIFINKDIPVAGGMAGGSADAAAVLVAMNELWHAGVPRRDLHHLAAQLGSDVPFALHGGTALGTGRGEQLATV----LARNVFHWVFAFADGG-LATPQVFKEIDRLRENGDPPRLAEADELLGALAAGDARRLAPLLGNELQAAAVSLNPELRRTLRAGESA-GALAGIVSGSGPTCAFLCTSADDAVQVSAELAGAGVCRTVRVASGPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97053 for 2131 contacts (-45.5/contact) +
2D Compatibility (PS) -27510 + (NN) -7187 + (LL) 1228
1D Compatibility (HY) -8400 + (ID) 3950
Total energy: -142872.0 ( -67.04 by residue)
QMean score : 0.393
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