Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIKVGVIGCSGRMGKRILNELITNTQVEIAGAVARLGSKYIGSDIGSAVYHSSNLGIKVTSSISDVFESSDVVIDFTTKECMLACLKAAMKFKTPLVSGTTGIESINLKKYAAKIPI---LWSANMSVGVNVLLKLVKKAAEFLDNEYDVEIWEMHHNLKKDSPSGTAMEFGKAIANALKVDFQP---YQHSHNSSNIREKGKIGFAVSRGGGVVGDHSVMFINSDERIELNHKAIDRTTFARGAVRAAIWLYENKRETPGLYSMQDVI |
1ARZ Chain:A ((6-268)) | --IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGE-LAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGE-RVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKE---SGLFDMRDVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ARZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176687 for 2040 contacts (-86.6/contact) +
2D Compatibility (PS) -27375 + (NN) -8766 + (LL) 876
1D Compatibility (HY) -16000 + (ID) 5250
Total energy: -233202.0 ( -114.31 by residue)
QMean score : 0.452
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