Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
1KAW Chain:A ((5-112))
-----VNKVILVGNLGQDPEVRYM----AVANITLATSES----------EQTEWHRVVLFGK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV-NVGGTMQML---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51589 for 631 contacts (-81.8/contact) +
2D Compatibility (PS) -10085 + (NN) -2417 + (LL) 2048
1D Compatibility (HY) -12400 + (ID) 2950
Total energy: -77393.0 ( -122.65 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1KAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAW-query.scw
PDB file :
Tito_Scwrl_1KAW.pdb
: