Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCY---IGSKIKLLIETCANNRENTTQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGPKLINRIITELSGKVSKLETNNNNFYP---INEDAVSALINLGYEKTKVYDTIKK-YKPNLDTKDIIRTALKELSNYEIDIMQ
1CUK Chain:A ((1-200))
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPM----TCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGL--HGDLFTPTDDAEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREALRAAL--------
General information:
TITO was launched using:
RESULT:
Template:
1CUK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132157 for 1302 contacts (-101.5/contact) +
2D Compatibility (PS) -19193 + (NN) -5637 + (LL) 956
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -168881.0 ( -129.71 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_1CUK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CUK-query.scw
PDB file :
Tito_Scwrl_1CUK.pdb
: