Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRTQYNNLVSSYARALFLVSENKLSVVRKEVEFLLAFFKSQHDVFIYLSHPMISFARKKEVIFSVNEHLSESLVKFIAVIFANKRSNLLISVLEKFLTLVRESENELEITIKSAETLSESNIKIITESLSFLGKIVRVDNAVDPSILGGFIV--KYGFNLIDASLKSYLDRLVDLSKVEILKTRNFI
3ODN Chain:A ((176-281))
-------------------------------------------------------FIRTYGVIYERNSYVFSDLFKELETYFANGRVDLL-EVMDKFFNTLYQ---KMFTVLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATRTYGQALTTAS-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3ODN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28604 for 581 contacts (-49.2/contact) +
2D Compatibility (PS) -10633 + (NN) -1176 + (LL) 7528
1D Compatibility (HY) -8800 + (ID) 1400
Total energy: -43085.0 ( -74.16 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_3ODN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ODN-query.scw
PDB file :
Tito_Scwrl_3ODN.pdb
: