Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIITIFGPPGSGKGTQSSLLIERYNLKLISVGDLLRNIISSGSELGKKIKDTVESGNLIQDGVICELLYDQLALMDDNFLFDGFPRNLNQAHFLTQILRERYNRDVDIVIELQLNDKVAIDRLKNRLVCLDCKSVYSTSSFKDDNNLVCTRCKSARLEKRIDDSDLSAIDRRIGEYHVQVKSLREYYRDK--LLMIDANLNVDQVKQEIESKISCSLV
4JKY Chain:A ((1-198))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI-EEVFPKHGNVIFDGFPRTVKQAEALDEML-EKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKY--------NPPPPGVKVIQREDDKP-EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG----
General information:
TITO was launched using:
RESULT:
Template:
4JKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98039 for 1480 contacts (-66.2/contact) +
2D Compatibility (PS) -20966 + (NN) -5438 + (LL) 964
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -139029.0 ( -93.94 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4JKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JKY-query.scw
PDB file :
Tito_Scwrl_4JKY.pdb
: