Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKGRLKLSCKKKVPALGKSNPQRRGVCTKVYTTTPRKPNSALRKVARVRISGYGEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDLRGVQNRKKARSKYGVKKSS
4JV5 Chain:L ((1-120))
-PTINQLVRKGREKVRKKSKVPAL-KGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPK
General information:
TITO was launched using:
RESULT:
Template:
4JV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29096 for 781 contacts (-37.3/contact) +
2D Compatibility (PS) -12716 + (NN) -4423 + (LL) 36
1D Compatibility (HY) -9600 + (ID) 4650
Total energy: -60449.0 ( -77.40 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_4JV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JV5-query.scw
PDB file :
Tito_Scwrl_4JV5.pdb
: