Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIELIFEKLKQSNPIPKIELSYTNHFTLLVAIVLSARTTDVSVNKITKELFSIANTPEKMLNLGQSELKKHISSIGLYNSKAKNIIELSRILVERHTSKVPTNFDDLVSLPGVGRKSANVFLNSGLGIPTLAVDTHVFRVSNKIGLVKEKD-VFKTEKSLLNVVPKKYLLYAHHWLVLHGRYVCKAQKPSCKTCIIHDLCEFECKRYKV
1ORP Chain:A ((8-216))
---QQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMR-
General information:
TITO was launched using:
RESULT:
Template:
1ORP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131453 for 1665 contacts (-79.0/contact) +
2D Compatibility (PS) -21830 + (NN) -14011 + (LL) 296
1D Compatibility (HY) -21200 + (ID) 4200
Total energy: -192398.0 ( -115.55 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_1ORP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ORP-query.scw
PDB file :
Tito_Scwrl_1ORP.pdb
: