Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNTLVNILFIMIPLLFSVAYLVYFERKVIGAIQLRHGPSVVGPFGLLQPFADAIKLLVKEPIIPFRANTILFIMAPMLTFILALIVWAVIPFGAEVITENGQQIVIPKVIANVNIGVLYVLAISSLGIYGIIVAGWSSNSNYAFLGSIRSAAQMISYEVSMGLIVATVVITTGTLNLGEMVATKHSMPFWIDLLMMPIGVVFFISLLAETNRHPFDLPEAEAELVSGYNVEYSSMPFALFFLGEYANMILGSAMMTIFFLGGWYPPLKLSLLYKIPGLIWFVLKIVLLLFIFVWTRATIPRYRYDQLMRLGWKVFLPISVLWVILISGVLLFTGNLPGRGL |
2JPK Chain:A ((5-31)) | ------------------------------------------WLAWVDPAYEFIKGFGKGAIKEGNKDKWKNI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2JPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -6542 for 112 contacts (-58.4/contact) +
2D Compatibility (PS) -2739 + (NN) -35 + (LL) 28256
1D Compatibility (HY) -400 + (ID) 250
Total energy: 18290.0 ( 163.30 by residue)
QMean score : 0.104
|
|
|