Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGI-FIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
1HRN Chain:A ((87-150))
-----------------------------------GFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIF-DNIISQGVLKEDVFSFYYNRDSENSLGGQIVLGGSDPQHYEGNFHYIN
General information:
TITO was launched using:
RESULT:
Template:
1HRN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46251 for 319 contacts (-145.0/contact) +
2D Compatibility (PS) -6362 + (NN) 970 + (LL) 2548
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -54895.0 ( -172.08 by residue)
QMean score : -0.163
(partial model without unconserved sides chains):
PDB file :
Tito_1HRN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HRN-query.scw
PDB file :
Tito_Scwrl_1HRN.pdb
: