Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKALIFTSLVVVVLIVVTFLYKNNETNDLQVVNVYSSRKEELVRTLFDEFTRNTGIKVRYIIDDYSQLLSRMEN---GSGTDVFLTADAVNLILAKKRGLLSQVNSEILKRAIPEKFRDSEGYWFGLTKRTRILVYNKESVDPKDLSTYEDLANKKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTNQIYAVAAGEGDIAIVNSYYFARILSSERENKKNVANKLGVFFPNHDSN--GVMVNISGAAVTKNAKNRENAIALLEFLVSKQAQELYAKKNQEYPIIEGVEVSNILKFWGDYPQSDLPLSELEKHLFEAVMIADECKWK |
2VOZ Chain:A ((34-346)) | ------------------------------RTINLYSSRHYNTDDALYDAFG-----EVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQRARVLYYSRDRVNPADLSTYEALADPQWRGKILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPDSARLMNEVGWQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VOZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166125 for 2709 contacts (-61.3/contact) +
2D Compatibility (PS) -34184 + (NN) -24667 + (LL) 3360
1D Compatibility (HY) -24000 + (ID) 6600
Total energy: -252216.0 ( -93.10 by residue)
QMean score : 0.552
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