Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKKVKLGILISGRGSNMQALMKACQNYGFPAEMACVISNNNKAAGLKVAEQAGMPTFVVENK----PLDVDK-IHEILVQHEVNLVCLAGFMRILKADFLNKWHGKVINVHPSLLPSFKGLNAQEQALKAGVKVTGCTVHYVTSEVDAGAIIAQAAVPVLPNDDIHSLSKRILSEEHKCYVEAVRLIAMLSRKLERP
1MEO Chain:A ((2-185))
-----RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAE---AGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGEN
General information:
TITO was launched using:
RESULT:
Template:
1MEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147890 for 1397 contacts (-105.9/contact) +
2D Compatibility (PS) -20021 + (NN) -15698 + (LL) 956
1D Compatibility (HY) -18800 + (ID) 4500
Total energy: -205953.0 ( -147.43 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_1MEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MEO-query.scw
PDB file :
Tito_Scwrl_1MEO.pdb
: