Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSGINNFMNEVLFFKIFYVPFIILLVAFGYIFLTLRFKFLNIRMFKHAFTILCGKYDTDHHDGHITHFQAFVIALSSTVGLGTVAGVAIAVSMGGPGAIPWMMITGFF---GMSAKFAEVTLAFRHRTEGQEQLFSGPFQYIRNGLEEFGFKKLGIILAAV-YAVFFVLSGLGGSVAFQTNQ-----MVSILSGYSNWVDSHPWFLSSIISALLALVIIGGIRRIARVSSALVPVMSLIYIFSCITIITFNIHNFSNVFKILFSNMIDFNAVGGGVVGAFVAGIQRAIFASEAGVGSASITHAVAKDEEPVRTGLVAMIEPCFDTMLICCLTGITIVITGAYQTGIGEGILVTQKAFETVSSWFPIFLIIAAPLFAFSSVISFVYCCEMGWLYLFGAKSIVIYRIAVVVVAFFSGLSKDIMAIANIGGTLFSCLALINMTALILFSSQINDEVQCYSKRLRNNKIN |
| 2YEV Chain:B ((40-131)) | ----------------------------------------------------------------------------------------------------PWVYFFSFLIFLVVAGSLAYVTWKFRARPEDQEE----PPQI-------HGNDRLEVVWTLIPLAIVFVLFGLTAKALIQVNRPIPGAMKVEVTGYQFWWDFHYPELGLRNSNELVLPAGVPVELEITSKDVIHSFWVPGLAGKRDAIPGQTTRISFEPKEPGLYYGFCAELCGASHARMLFRVVVLPKEEFDRFVEAAKASPAPVADERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLGAGIVENTPENLKAWIRDPAGMKPGVKMPGFPQLSEEDLDALVRYLEGLKVEGFDFGALPKF---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YEV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16176 for 296 contacts (-54.6/contact) +
2D Compatibility (PS) -8801 + (NN) -4625 + (LL) 14304
1D Compatibility (HY) -9600 + (ID) 1500
Total energy: -26398.0 ( -89.18 by residue)
QMean score : -0.201
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