Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFGLHHFNYTLKKNKNDVAKALFEYGAKIDVDYVEERLIISGTTEYSQSTVEILLPYASI
4HCV Chain:A ((23-55))
--FGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP
General information:
TITO was launched using:
RESULT:
Template:
4HCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2511 for 123 contacts (20.4/contact) +
2D Compatibility (PS) -3272 + (NN) 1285 + (LL) 528
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -1698.0 ( -13.80 by residue)
QMean score : -0.009
(partial model without unconserved sides chains):
PDB file :
Tito_4HCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HCV-query.scw
PDB file :
Tito_Scwrl_4HCV.pdb
: