Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLAKGKEMGKLEGKIALIAGASGGMGSAVAKRFVREGAYVILISRSIDNLKQLYDEIEKLDEFKEGSVKLIQLDLLDF--ENVKILANMIESLKLSESGALDILVACTGILGKLNLVHDCELEELQNVMNTNFTANWYLLKNLDPVLKKSNSGRVIFMTSEVTLSPSSYPYWVPYAASKAALEIMVKIYASETKHTKLCVNAVYSEGPVDSEMYKQAFPGKDISELILPNKLTDKFVELASEDCSISGQVLPLSKSLE
3GY0 Chain:A ((8-229))
-----------LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI---NEETGRQPQWFILDLLTCTSENCQQLAQRI----VVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQINVNATFMLTQALLPLLLKSDAGSLVFTSSSV--GRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLRVNCI-NPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP--
General information:
TITO was launched using:
RESULT:
Template:
3GY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158811 for 1795 contacts (-88.5/contact) +
2D Compatibility (PS) -24027 + (NN) -12559 + (LL) 1672
1D Compatibility (HY) -13200 + (ID) 3650
Total energy: -210575.0 ( -117.31 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3GY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GY0-query.scw
PDB file :
Tito_Scwrl_3GY0.pdb
: