Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTS-DKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVGGEEG----INHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
2GVP Chain:A ((136-297))
------------------------------------------LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAA-SIATHMRPYRKKS
General information:
TITO was launched using:
RESULT:
Template:
2GVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67432 for 1086 contacts (-62.1/contact) +
2D Compatibility (PS) -17443 + (NN) -8696 + (LL) 4244
1D Compatibility (HY) -13600 + (ID) 2500
Total energy: -105427.0 ( -97.08 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_2GVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GVP-query.scw
PDB file :
Tito_Scwrl_2GVP.pdb
: