Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYVVIINIVLLKVLMVLTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHGPYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDI--------LKNNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDLMIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHIFPAEIPDNIYEMTLEH-ALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDFNELVKIIIEDSLQHKKILEIK |
| 4C5B Chain:A ((25-327)) | --------------MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN---ALQDALRLAFQHD---EE----------VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL-EASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAAR-QAGMSFSQLVVRILELAD--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C5B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130861 for 2558 contacts (-51.2/contact) +
2D Compatibility (PS) -31844 + (NN) -16396 + (LL) 4072
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -200929.0 ( -78.55 by residue)
QMean score : 0.454
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