Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGA---LTGLWLSFTALSHLI--IGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
3N23 Chain:A ((263-322))
-----IITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSPHDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQE
General information:
TITO was launched using:
RESULT:
Template:
3N23.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22101 for 243 contacts (-91.0/contact) +
2D Compatibility (PS) -5324 + (NN) 507 + (LL) 296
1D Compatibility (HY) -8000 + (ID) 800
Total energy: -35422.0 ( -145.77 by residue)
QMean score : -0.196
(partial model without unconserved sides chains):
PDB file :
Tito_3N23.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N23-query.scw
PDB file :
Tito_Scwrl_3N23.pdb
: